How is Alagille syndrome diagnosed?

Alagille syndrome (ALGS) is a rare genetic condition. It mainly affects the liver, but can also affect other parts of the body, including the heart, kidneys, eyes, face, skeleton and blood vessels. 

 

The information on this page is for:

  • Parents of children with Alagille syndrome or suspected Alagille syndrome.
  • Young people with Alagille syndrome.
  • Adults with Alagille syndrome.
  • Family, friends, carers, and healthcare professionals.

 

If your child shows signs of Alagille syndrome, doctors will do different tests to help confirm the diagnosis. But a diagnosis can be difficult in young babies because the condition looks similar to other types of liver disease.

On this page:

Tests

 

The tests needed will be different for each child. They may include:

Liver blood tests (also known as liver function tests/LFTs)

A blood sample will be taken and tested in a laboratory. This is a common way to check if the liver is damaged and how well it works. The tests also monitor liver disease over time. They show if your child’s liver is getting healthier, getting worse or staying the same.

Ultrasound scans

Ultrasound scans use sound waves to make pictures of the inside of the body. They help check and monitor:

 

  • the size and texture of your child’s liver
  • the size of your child’s spleen
  • blood flow to and from your child’s liver
  • your child’s gallbladder and bile ducts
  • the size and shape of your child’s kidneys
Liver stiffness measurements

The medical team use special scans to check the amount of stiffness in your child’s liver. Healthy liver tissue is soft, so stiffness shows that damage has occurred. You may hear this type of scan called a FibroScan or transient elastography.

Genetic tests

Special blood tests will check for changes in your child’s DNA. In Alagille syndrome, doctors look for changes in the JAG1 or NOTCH2 genes. Family members may also be offered genetic testing.

Liver biopsy

Liver biopsies are not always needed, but may be used if there is doubt around the diagnosis. During a liver biopsy a very thin needle goes through the tummy wall and into the liver. The needle collects a small sample of liver tissue. This is sent to a laboratory to be studied under a microscope.

X-rays

An X-ray uses radiation to take a picture of the bones in the body. In Alagille syndrome, it looks for changes in the bones of your child’s spine.

Heart tests

An echocardiogram is a type of ultrasound that uses sound waves to make pictures of the heart. It looks at the structure of the heart and blood flow through the heart. It also looks for heart murmurs, which are extra sounds in the heartbeat.

Eye tests

Doctors check for eye problems with a special lamp called a slit lamp. This is a microscope with a bright light that helps the doctor see inside your child’s eyes.

Cholangiography

A cholangiogram is an X-ray that uses a special dye to show the bile ducts. It is usually done during surgery when your child is asleep. This test checks for blockages in bile ducts outside the liver.

Doctors may use a cholangiogram if a diagnosis in your child is not clear or if genetic test results aren’t ready. It can also help rule out other liver conditions.

Magnetic resonance imaging (MRI) / magnetic resonance angiography (MRA)

These tests use strong magnets and radio waves to create images of the body. They can only be used when children are old enough to sit very still. In Alagille syndrome, they help doctors see the blood vessels in the head.

The first 2 years were really hard after diagnosis but it does get better.

- Parent

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How Liver UK can help

A diagnosis of liver disease can be worrying, and you may have a lot of questions.

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This content was last reviewed: July 2026

Our expert reviewers:

We would like to thank everyone who helped with creating and reviewing this page. Including Professor Alistair Baker, Consultant Paediatric Hepatologist, King’s College and Lindsay Hogg, Principal Specialist Nurse, Birmingham Women’s and Children’s Hospital. And all our parent and family reviewers.

Find out how we make our patient information.

Everyone’s experience of liver disease will be different. Always talk to your specialist medical team for personal advice.

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